How do I get a police clearance certificate for Canada PR if I am?
You have to apply through the passport office in the zone you are living now. Your passport being issued from other city will have no implication. You will have to submit an address proof for you, Adhar is the best. May be, before you apply for PCC, have address changed on your Adhar which will help you in the process. Other address proof like rent agreement, Landline bill in your name would be fine too. There will be a police verification at the place of your residence.